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Test Code LAB7392 Chlamydia trachomatis, Neisseria gonorrhoeae, PCR

Performing Lab

Arnot Ogden Medical Center

Ordering Recommendations

Detection of Chlamydia trachomatis and Neisseria gonorrhoeae.

Collect

Urine (First Catch or Dirty) (Male and Female patients)

Xpert CT/NG Swab

  • self-collected vaginal
  • endocervical
  • rectal
  • pharyngeal

Collection Device

Urine: sterile container

Swab: Xpert CT/NG Swab Collection Kit (MUST use swab provided in kit)

Specimen Volume

Minimum volume (urine) : 7 mL

Stability (from collection to initiation)

  Room Temperature Refrigerated
Urine - sterile cup (female) 24 hours 8 days
Urine - sterile cup (male) 3 days 8 days
Xpert Swab Kit 60 days 60 days

 

Storage/Transport Temperature

Room Temperature or Refrigerated

Methodology

Real-Time PCR

Start Date

9/13/2017

Last Review Date

6/19/2025

Specimen Handling

Room Temperature or Refrigerated

Reference Interval

REFERENCE RANGE: NOT DETECTED

Lab Section

Microbiology

Collection Instructions

Urine

  • Patient should not have urinated for at least 1 hour prior to collection.
  • Patients should not cleanse the labia or penis prior to collection. 
  • Collect the first 20-50mL of the inital stream into a sterile urine cup. 
  • Collecting a larger volume may reduce test sensitivity. 

XpertCT/NG Self-collected Vaginal Swab

  • Open the collection kit package and discard the wrapped large cleaning swab.
  • Open the collection swab by peeling down from the top.
  • Remove the swab, taking care not to touch the tip or lay it down.
  • Hold the swab in your hand, placing your thumb and forefinger in the middle of the shaft between across the scoreline.
  • Carefully insert the swab into your vagina about two inches.
  • Gently rotate the swab for 10-30 seconds.
  • Withdraw the swab and continue to hold it in your hand.
  • Unscrew the cap from the tube. Place the collection swab into the tube.
  • Break the shaft of the swab on the scoreline. Avoid splashing tube contents on your skin.
  • Recap the tube.

XpertCT/NG Endocervical Swab

  • Open the package.
  • Remove excess mucous from the cervix and surrounding areas using the large individually wrapped cleaning swab.
  • Discard the cleaning swab.
  • Open the package that contains the collection swab.
  • Hold the swab in your hand, placing the thumb and forefinger in the middle of the shaft.
  • Insert the collection swab into the endocervical canal and rotate swab for 10-30 seconds. 
  • Withdraw the collection swab from endocervical canal.
  • Unscrew cap from the transport tube and immediately insert the collection swab into the tube.
  • Break the swab shaft against the side of the tube at the score mark.
  • Replace the pink cap back on the reagent tube and secure tightly.

XpertCT/NG Pharyngeal Swab

  • Open the collection kit package and discard the larger swab.
  • Open the collection swab by peeling down from the top.
  • Remove the swab, taking care not to touch the top or lay it down.
  • Hold the swab in your hand, placing the thumb and forefinger in the middle of the shaft.
  • Instruct the patient to open the mouth widely. Position the tongue toward the bottom of the mouth. Swab areas of the pharynx (tonsil, posterior wall, uvula, posterior wall).
  • While holding the swab, unscrew the top from the transport tube.
  • Break the shaft of the swab on the scoreline. Avoid splashing tube contents on your skin.
  • Recap the tube.

XpertCT/NG Rectal Swab

  • Open the collection kit package and discard the larger swab.
  • Open the collection swab by peeling down from the top.
  • Remove the swab, taking care not to touch the top or lay it down.
  • Hold the swab in your hand, placing the thumb and forefinger in the middle of the shaft.
  • Carefully insert the swab approximately 1 cm beyond the anal sphincter and rotate gently.
  • While holding the swab, unscrew the top from the transport tube.
  • Break the shaft of the swab on the scoreline. Avoid splashing tube contents on your skin.
  • Recap the tube.

Reported

Same shift

Limitations

  • The Xpert CT/NG Assay has only been validated with the following specimen types, collected with the Cepheid Xpert Swab Specimen or Urine Specimen Collection Kits:
    • Endocervical swabs
    • Patient-collected vaginal swabs
    • Male and female urine
    • Male and female pharyngeal swabs
    • Male and female rectal swabs
  • Erroneous test results might occur from improper specimen collection, technical error, sample mix-up, or because the number of organisms are below the limit of detection of the test.
  • Careful compliance with the instructions in this insert and to the Swab and Urine Collection Kit instruction documents are necessary to avoid erroneous results.
  • False negative results may occur if the organism(s) is present at levels below the analytical limit of detection.
  • This test has been validated using the procedures provided in the package insert only. Modification to these procedures may alter the performance of the test and are not permitted.
  • Because the detection of CT and NG is dependent on the DNA present in the sample, reliable results are dependent on proper sample collection, handling and storage.
  • With endocervical and patient-collected vaginal specimens, assay interference may be observed in the presence of: blood (>1% v/v) or mucin (>0.8% w/v).
  • With urine specimens, assay interference may be observed in the presence of: blood (>0.3% v/v), mucin (>0.2% w/v), bilirubin (>0.2 mg/mL), or Vagisil feminine powder (>0.2% w/v).
  • Collection and testing of urine specimens with the Xpert CT/NG Assay is not intended to replace cervical exam and endocervical sampling for diagnosis of urogenital infection. Other genitourinary tract infections can be caused by other infectious agents.
  • The effects of other potential variables such as vaginal discharge, use of tampons, douching, and specimen collection variables have not been determined.
  • A negative test result does not exclude the possibility of infection because test results may be affected by improper specimen collection, technical error, specimen mix-up, concurrent antibiotic therapy, or the number of organisms in the specimen which may be below the sensitivity of the test.
  • The Xpert CT/NG Assay should not be used for the evaluation of suspected sexual abuse or for other medico-legal indications. Additional testing is recommended in any circumstance when false positive or false negative results could lead to adverse medical, social, or psychological consequences.
  • The Xpert CT/NG Assay provides qualitative results. No correlation can be drawn between the magnitude of the Ct value and the number of cells in an infected sample.
  • The predictive value of an assay depends on the prevalence of the disease in any particular population.
  • Positive results may be observed after successful antibiotic treatment due to target nucleic acids from residual non-viable chlamydia.
  • Xpert CT/NG Assay performance has not been evaluated in patients less than 14 years of age.
  • Xpert CT/NG Assay performance has not been evaluated in patients with a history of hysterectomy.
  • The patient-collected vaginal swab specimens are an option for screening women when a pelvic exam is not otherwise indicated.
  • The Xpert CT/NG Assay has not been validated for use with vaginal swab specimens collected by patients at home. The patient-collected vaginal swab specimen application is limited to health care facilities where support/counseling is available to explain procedures and precautions.
  • The Xpert CT/NG Assay has not been evaluated with patients who are currently being treated with antimicrobial agents active against CT or NG.
  • As with many diagnostic tests, results from the Xpert CT/NG Assay should be interpreted in conjunction with other laboratory and clinical data available to the physician.
  • Mutations or other changes within the regions of bacterial genome covered by the primers and/or probes in the Xpert assay may result in failure to detect target organisms.