Test Code LAB1747 Nasal Staph Aureus DNA
Performing Lab
Arnot Ogden Medical Center
Ordering Recommendations
Rapid detection of Staphylococcus aureus (SA) and methicillin-resistant Staphylococcus aureus (MRSA) from nasal swabs in patients at risk for nasal colonization.
Collect
Culturette Swab (a single swab may be used for both nares)
Collection Device
Only acceptable transport medium is Liquid Stewart's Medium.
Stability (from collection to initiation)
| Room Temperature | 24 hours |
| Refrigerated | 5 days |
Storage/Transport Temperature
Room Temperature or Refrigerated
Methodology
Real-Time PCR
Synonyms
Nasal MRSA
MRSA PCR
Start Date
9/13/2017
Last Review Date
6/19/2025
Specimen Handling
Room Temperature or Refrigerated
Reference Interval
REFERENCE RANGE: NOT DETECTED
Collection Instructions
- Specimens are collected using BBL culture swabs with Liquid Stuarts media. One swab is used to sample both nares.
- Insert swab approximately 2cm into the nares.
- Gently press a finger on the outside of the nares to ensure good contact with mucosal surfaces and then rotate swab for 3 seconds.
- remove swab and repeat with the other nares using the same swab.
- Place swab back in the transport tube.
Remarks
This test is only approved for nasal specimens.
Please refer to the MRSA Skin and Soft Tissue test for other applicable specimen types.
Reported
Same shift.
Limitations
- The performance of the Xpert SA Nasal Complete Assay was validated using the procedures provided in this package insert only. Modifications to these procedures may alter the performance of the test.
- Results from the Xpert SA Nasal Complete Assay should be interpreted in conjunction with other laboratory and clinical data available to the clinician, and should be used as an adjunct to nosocomial infection control efforts to identify patients needing enhanced precautions. Results should not be used to guide or monitor treatment for MRSA or SA infections.
- Erroneous test results might occur from improper specimen collection, failure to follow the recommended sample collection, handling and storage procedures, technical error, sample mix-up, or because the number of organisms in the specimen is too low to be detected by the test. Careful compliance with the instructions in this insert is necessary to avoid erroneous results.
- A positive test result does not necessarily indicate the presence of viable organisms. It is however, presumptive for the presence of MRSA or SA.
- The Xpert SA Nasal Complete Assay positive result does not necessarily indicate intervention eradication failure since non-viable DNA may persist. A negative result following a previously positive test result may or may not indicate eradication success.
- The performance characteristics were not established for patients ≤21 years of age.
- Because the detection of MRSA and SA is dependent on the number of organisms present in the sample, reliable results are dependent on proper specimen collection, handling, and storage.
- Mutations or polymorphisms in primer or probe binding regions may affect detection of new or unknown MRSA variants resulting in a false negative result.
- In samples containing both MRSA and SA, the Xpert SA Nasal Complete Assay may not detect the MRSA organisms. The pivotal clinical study included one sample with documented MRSA/SA mixed infection; the Xpert SA Nasal Complete Assay successfully identified the sample as MRSA positive/SA positive.
- In a mixed culture, the analytical LoD of MRSA is variable when extremely high concentrations of SA are present. Competition from SA was observed at a MRSA:SA ratio of 1:1x106 in 7 of 8 SCCmec types tested. For SCCmec type VIII, competition from SA was observed at a MRSA:SA ratio of 1:1x103.
- Inhibition of the SA Nasal Complete Assay resulting in Invalid test results has been observed in the presence of inhaled nasal steroids Flonase and Nasonex in SA negative samples at concentrations greater than 5% v/v, and 10% v/v, respectively.
- Inhibition of the SA Nasal Complete Assay resulting in false negative test results has been observed in the presence of inhaled nasal steroids Flonase and Nasonex in MRSA positive samples at concentrations greater than 1% (v/v) and 5% (v/v), respectively.
- The Xpert SA Nasal Complete Assay may generate a false positive MRSA result when testing a mixed infection nasal specimen containing both methicillin-resistant coagulase-negative Staphylococcus and empty cassette SA.
- The Xpert SA Nasal Complete Assay may generate false negative MRSA results when testing borderline oxacillin resistant S. aureus (BORSA). The mechanism of oxacillin resistance in BORSA strains is due to an increased production of B-lactamases, not the mecA gene. BORSA with oxacillin MICs of 4 – 8 µg/mL are considered borderline resistant but would be reported as MRSA negative by the Xpert SA Nasal Complete Assay. BORSA strains are rare in the United States.
- The Xpert SA Nasal Complete Assay may generate false negative MRSA results when testing modified S. aureus (MOD-SA). The mechanism of oxacillin resistance in MOD-SA strains is due to changes in affinity of penicillin binding proteins for oxacillin, not the mecA gene. MOD-SA with oxacillin MICs of 4 – 8 µg/mL are considered borderline resistant but, would be reported as MRSA negative by the Xpert SA Nasal Complete Assay. MOD-SA strains are rare in the United States.
- There may be an association with false positive results in specimens containing blood.
- As with all PCR based in vitro diagnostic tests, extremely low levels of target below the LoD of the assay may be detected, but results may not be reproducible (refer to "Reproducibility" section for further details).
- Xpert SA Nasal Complete Assay results may sometimes be "INVALID" due to a failed SPC control, "ERROR" or "NO RESULT", and require retesting that can lead to a delay in obtaining final results.
- As with all in vitro diagnostic tests, positive and negative predictive values are highly dependent on prevalence. Xpert SA Nasal Complete Assay performance may vary depending on the prevalence and population tested.